NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211477_10029591

Scaffold Ga0211477_10029591


Overview

Basic Information
Taxon OID3300020374 Open in IMG/M
Scaffold IDGa0211477_10029591 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2324
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_030
CoordinatesLat. (o)33.93Long. (o)32.7322Alt. (m)Depth (m)70
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019327Metagenome / Metatranscriptome230Y
F032309Metagenome / Metatranscriptome180N
F033761Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0211477_100295911F032309N/ATKEFFDYTKSLPFKDITHFWDIPYKEMLDEVKSVDEKYWRRPFDADNDQINRMKLDDSESVNHYPGLKGDLVEAHGWKSLCFLNETGDSKDQITRFPPVFNTAGDYKETLKYFLNNRKWTNVAEFSPTLVKFFKEVISKYMHVGQIFVTRLEGGGVITEHNDIPEDSKHLLDGEQVHMFDMLNTFNLCLNHVKSCYSVFDNKVMPAYDGCLRWTNVGKKHWVVNMNRQPQYQIIWQGIYKKQFRQLVMENK
Ga0211477_100295912F033761GGAGMAVINNHSSINLDSTFQSNHTELLQFFYNEGLDVEINHDFAGLRTLLLSKEKDDYPYDFDPAFESELNNATGFVLYLKLSGNVVATYAAKKLMYGTFVEGMKAKFDGTYENIDLPASLEEAYSSCQWVSKDHRGKRWGRALDHLKKDIVFDILKCDLNYAIHKEAYKDYHTEHLSYNISEKIALIPNGDVGGAGEVIDKVYNIAYITTTQWTAKQSEIKALYS
Ga0211477_100295913F019327GGAVKLKHYTLKPFQLESNHISQIHNIIEKVVSEKKDEYWKNYTDYSIFDQTMITIGVIDDKVKAFSSIYTRSFYDENVYRLFNRFLISDDIREDGGSKMYKGDHRFLEMIDQQVKYVKTLNPKFYFLSRQRKNTRWLRWYFDKYNKEYNENMMVSDKQYYICNGSEYDCCQTLIYPKDKDIPFKSYK

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