Scaffold Ga0211477

Basic Information
Taxon OID	3300020374 Open in IMG/M
Scaffold ID	Ga0211477_10029591 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020374 Open in IMG/M

Scaffold ID

Ga0211477_10029591 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2324
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2324

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_030
Coordinates	Lat. (^o)	33.93	Long. (^o)	32.7322	Alt. (m)	Depth (m)	70
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_030

Coordinates

Lat. (^o)

33.93

Long. (^o)

32.7322

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019327	Metagenome / Metatranscriptome	230	Y
F032309	Metagenome / Metatranscriptome	180	N
F033761	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211477_100295911	F032309	N/A	TKEFFDYTKSLPFKDITHFWDIPYKEMLDEVKSVDEKYWRRPFDADNDQINRMKLDDSESVNHYPGLKGDLVEAHGWKSLCFLNETGDSKDQITRFPPVFNTAGDYKETLKYFLNNRKWTNVAEFSPTLVKFFKEVISKYMHVGQIFVTRLEGGGVITEHNDIPEDSKHLLDGEQVHMFDMLNTFNLCLNHVKSCYSVFDNKVMPAYDGCLRWTNVGKKHWVVNMNRQPQYQIIWQGIYKKQFRQLVMENK
Ga0211477_100295912	F033761	GGAG	MAVINNHSSINLDSTFQSNHTELLQFFYNEGLDVEINHDFAGLRTLLLSKEKDDYPYDFDPAFESELNNATGFVLYLKLSGNVVATYAAKKLMYGTFVEGMKAKFDGTYENIDLPASLEEAYSSCQWVSKDHRGKRWGRALDHLKKDIVFDILKCDLNYAIHKEAYKDYHTEHLSYNISEKIALIPNGDVGGAGEVIDKVYNIAYITTTQWTAKQSEIKALYS
Ga0211477_100295913	F019327	GGA	VKLKHYTLKPFQLESNHISQIHNIIEKVVSEKKDEYWKNYTDYSIFDQTMITIGVIDDKVKAFSSIYTRSFYDENVYRLFNRFLISDDIREDGGSKMYKGDHRFLEMIDQQVKYVKTLNPKFYFLSRQRKNTRWLRWYFDKYNKEYNENMMVSDKQYYICNGSEYDCCQTLIYPKDKDIPFKSYK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211477_10029591

Overview

Ecosystem & Geography

Associated Families

Sequences