Scaffold Ga0211477_10014890

Overview

Basic Information

• Taxon OID: 3300020374
• Scaffold ID: Ga0211477_10014890
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3639
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_030
• Coordinates
  • Lat. (^o): 33.93
  • Long. (^o): 32.7322
  • Depth (m): 70

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008851	Metagenome / Metatranscriptome	327	Y
F015681	Metagenome / Metatranscriptome	253	Y
F023445	Metagenome	210	Y
F026125	Metagenome / Metatranscriptome	199	N
F051473	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211477_100148902	F023445	GGAG	MDEFFVQGVVGGVLNRHKNRTLDKNRIATLSVEIASNLDKASQYTDVIKEANLAKDNPLSIEMWKGWDGVERPYEKEYLDHWTCDICDEHTHEVDYDYLGSGTNHLKCELEHENAYNDYLDNTKSEQLEIQFPEDDNETS
Ga0211477_100148903	F015681	GGAGG	MRHHKSEYENYILLSNQTKLLGGSYSRFLKFKTLMSSLNQMTQKQSNTYTYNGEHYVSSVTNAEVLKIQSAIDYGTYNSSIDKLKYIFNDIGDRLF
Ga0211477_100148905	F026125	AGGAG	MFNYINSWKSRKSEKWNIEVRLGRITLLQLNYDAKKSKFRFMVLNFGLEIGG
Ga0211477_100148907	F008851	AGTAGG	MKKYKVIESYSSTEGTLYKGEVLKEDQNNTLDGHKRLRDSMGRVWFIPHKYIVRI
Ga0211477_100148909	F051473	N/A	LDNIDIRPNLDNKLISIDEDRFYVLAMVLVENCGYTTEKLKNMWGLADTILRNDKVYYICMKLIDVEYTEIQN