Scaffold Ga0211477_10010623

Overview

Basic Information

• Taxon OID: 3300020374
• Scaffold ID: Ga0211477_10010623
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4533
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_030
• Coordinates
  • Lat. (^o): 33.93
  • Long. (^o): 32.7322
  • Depth (m): 70

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F003020	Metagenome / Metatranscriptome	513	Y
F009812	Metagenome	312	Y
F011410	Metagenome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211477_100106232	F009812	AGGAG	MDEFEIEWIPEDTGAPYEAADILPDIPSHTIDKMCKKKFGHTNWARMGQLSPEDLLGNPHEFDYENGVIFFKNAHMV
Ga0211477_100106233	F000720	GAGG	MNLIKENTKVRKEIPNRMMSATFALPIDGRKVIGILNYIASNTGITPMAFWIKLKPTDSYLDRELRASGKLISRCLQNSESLKDLVETLSQDNVMGQMANYLHKNMEDIIMGKQPEKKQRELSTDPYAMKE
Ga0211477_100106234	F011410	AGGA	MKDFKIKLEWSTSDVLVWTVLGIGVGLCIVNLVTIYNIYSVIETMWLEIQQVKETNISLYQFIEAHKNEFD
Ga0211477_100106238	F003020	AGGAG	MPDISKFKSVSVSTDTHDKLMSMAEKRFEVPVSVQKVIEFLIEKEMKKKNGRSNGKSRR