Scaffold Ga0211477_10009541

Overview

Basic Information

• Taxon OID: 3300020374
• Scaffold ID: Ga0211477_10009541
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4868
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_030
• Coordinates
  • Lat. (^o): 33.93
  • Long. (^o): 32.7322
  • Depth (m): 70

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014744	Metagenome / Metatranscriptome	260	Y
F018196	Metagenome / Metatranscriptome	236	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211477_1000954117	F018196	GGAGG	MTPQEIKKAVEYKQGHFNMVQYILKEKPEWSISVYDIEEDRFIVEKSKDYEQIRKAIKDYQTEIICYSKEDKRIGWAWFIPYNETDEDIVSDYSNTLTLNKWAEQFEELHKQLEDK
Ga0211477_100095417	F014744	AGGAG	MYNNLNQKLSELQSGNYLIKVTSIGDKRPNKYYSKEYFVTIKYTVTDLNNIERKFGVIVAGMGSKPIELNVERELLPTNYFTWESFDEVLFDRLSRTQKSINEEGYYKKDRDTGRVVVK