Scaffold Ga0211477_10008819

Overview

Basic Information

• Taxon OID: 3300020374
• Scaffold ID: Ga0211477_10008819
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5101
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_030
• Coordinates
  • Lat. (^o): 33.93
  • Long. (^o): 32.7322
  • Depth (m): 70

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002594	Metagenome / Metatranscriptome	545	Y
F004220	Metagenome	448	Y
F024421	Metagenome	206	Y
F026714	Metagenome	197	N
F043623	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211477_1000881910	F002594	N/A	MAKIPTTRLNSAPVVYDQNEFNQLVEDLQDIIKILNTTYPKDQSDERERQVWFLGG
Ga0211477_1000881911	F024421	GGAGG	MNDILVSKLNHKQNLEAQWASKLLANGSVTVSMVKISKEIKDVEREIIEVTEQKQ
Ga0211477_100088193	F026714	AGGAGG	MAHTYKKLTVYLNEEQEKVLTDFDLKIIDKDDFDLLHYTVGIISKRLAETNHKMITDVDPNKCDPATLQYSSKTIG
Ga0211477_100088194	F043623	N/A	MFKRIKKAEDDPSLSQAQKYVKGWVERVTLNSGVLLVDEEATLKRGLKKNKAASFLANKDGYPDILGPAIFIPYEIQSQWF
Ga0211477_100088195	F004220	GAGG	MVEKDKLDWCYYFKSIKSWIRVCSKDMNEGFSVFTRQTRVKEHYKKIADSGVEFYTCDDDDLDKEYGMYYGNLEFDPLDIMESHSGHTKMFHKENGKWQQL