Scaffold Ga0211477_10006000

Overview

Basic Information

• Taxon OID: 3300020374
• Scaffold ID: Ga0211477_10006000
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6452
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_030
• Coordinates
  • Lat. (^o): 33.93
  • Long. (^o): 32.7322
  • Depth (m): 70

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013362	Metagenome	272	Y
F023451	Metagenome	210	Y
F054781	Metagenome / Metatranscriptome	139	N
F075988	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211477_1000600010	F075988	N/A	MTNKVSQWLIDYVYKKNGVDLTNVPSDSSWTELNPFRDSERLSDHVIEFINEKNLSGIKSSMDKVEDDSMKQAKEERELNTINKGNNNE
Ga0211477_1000600011	F023451	GGA	MSSDWIKFKEPAFIGVDYDCKGNPLMDWVNNLKLKSDDNTIGYDFKVVAYRKVKVSDE
Ga0211477_1000600013	F013362	AGG	MSSEKQLILIILVAVIVLGYQWYKDKKKNDYWKKYRRSQGWE
Ga0211477_100060005	F054781	N/A	MLCTMWEYIQDDLISIVAIDEKTNTLCIKIYGLQNKVAAETFAHYTMSLLQFDYHNAEYSMPSKMIH