NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211477_10004977

Scaffold Ga0211477_10004977


Overview

Basic Information
Taxon OID3300020374 Open in IMG/M
Scaffold IDGa0211477_10004977 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7175
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_030
CoordinatesLat. (o)33.93Long. (o)32.7322Alt. (m)Depth (m)70
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003693Metagenome / Metatranscriptome473Y
F018479Metagenome / Metatranscriptome235Y
F028814Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0211477_1000497710F003693N/ATSTLFFCYSKEDMIKSKTALIDISADNNNSLGVQTEGMLLCGIQFPAAMTGSNVTFDFSMDNTTFVDVKETDGTDVTYTVSVGDIVRVDPSGWAFASNGYIRVTSDGNEAADRSLTLHFRHS
Ga0211477_100049776F028814GAGMLKEGGSLLIDTIGNKPIDEDIDLLPDAGGGINEGEQMMLWSDSGHALIYLPQETLLLVG
Ga0211477_100049779F018479AGGAGMANIGNLVDRTYREYLEPMDDIVSYTTLSTGINDSVTSVVFNGDLLSVEEEDALDAGSIIEIGQELLICTDLNAVTNTVTVTRAARGTTASAHSAGDIIKIAPPFPRRNVFDAVCDQIKNLYPTLFAVEVKSITSKTGYIPLSGSTDNHLVAPIKAISQYTDFSAGSDETGTVFAGVAVELVDLPNPFTYTDADGVSQTITYSNNGPNNVKAVQTYNVNAGHTVFVTFKKKFVTPTLETDTLATIGLENEYEPIIMAGVAAQMIAGRDIPTATADYITDQMGTSNFPVNSASNIRTSLLRYQSDLIEQARKDLRARYPEPVTINKIAYT
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