NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211477_10003444

Scaffold Ga0211477_10003444


Overview

Basic Information
Taxon OID3300020374 Open in IMG/M
Scaffold IDGa0211477_10003444 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8853
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_030
CoordinatesLat. (o)33.93Long. (o)32.7322Alt. (m)Depth (m)70
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049301Metagenome / Metatranscriptome147N
F058282Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0211477_100034441F058282AGGAGMAYTGTLVAGGPGNFKSPNSATEHDGVEVDFITVDYISAMNAEVTFPLASANTAGLQLAMEAIQNQGVNILGKGVLSNSNTEQTYMVRRDSLDTVSGTTTAA
Ga0211477_100034442F049301AGGAGGMPIATNNNNLGTTIGNLYTGNGMEVQYFTVVVKDSSATAIDLRVHDDSDGKFHKDGLLDRVLQKAQNRGTVVHFNVKNDNSGTVTIGMEGQFATATNLATEFDNSDGSSNLSVKYRNTKDSTTEDGVGDIAGTTVTADTLV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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