NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211477_10002249

Scaffold Ga0211477_10002249


Overview

Basic Information
Taxon OID3300020374 Open in IMG/M
Scaffold IDGa0211477_10002249 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11168
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (68.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_030
CoordinatesLat. (o)33.93Long. (o)32.7322Alt. (m)Depth (m)70
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000497Metagenome1075Y
F002613Metagenome / Metatranscriptome543Y
F013138Metagenome / Metatranscriptome274N
F015799Metagenome / Metatranscriptome252Y
F018451Metagenome235Y
F047923Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0211477_100022491F047923N/AMAVKPDQIRQAKKFLENKKISIKTVKPHLFAIASNGLRKNFNDTLDFFKKG
Ga0211477_1000224915F015799GGAGGMTTTQKTTRTPVQYNSSGAAAGFGPQAHPPKQDPSAANTIQDKTKGNSDFHGDNMAFIKKIKRG
Ga0211477_1000224916F013138GGAGGMSKNPFTRQAISNHNTENFSVKDVKAANKRFYEKFPGAIEPAAMIKKAMQDPGDEVVKEQTRKENEMENFIGKINITGGIY
Ga0211477_1000224921F000497N/AMKNKNEAKIIENKVALSFREYKDKKILFRLFNNKRDKTKSFFIYEKAKFSTNIELAFNNDYRKIDIEYDTTKNNRFKKVNLLIDLNSYLDKNKKDLYLDLINSNKEFIKTNKVSNDIIENIKFFENKVNSL
Ga0211477_1000224923F018451AGGAGMADDKYLDVVSPNPNAVLPKDYKFNKIQHSPKVLQVVEGMLGFEFNGFLIVDPTLDETGRFPVSATTYYKITKNQKNRMIKHNIKL
Ga0211477_1000224924F002613GAGGMLRAIWFALHFAIIMMGAIITIHFDVWLGLAIMLVFAVKFAFMIPNREEL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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