Scaffold Ga0211477_10001431

Overview

Basic Information

• Taxon OID: 3300020374
• Scaffold ID: Ga0211477_10001431
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14203
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (72.97%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_030
• Coordinates
  • Lat. (^o): 33.93
  • Long. (^o): 32.7322
  • Depth (m): 70

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018286	Metagenome	236	Y
F030886	Metagenome	184	Y
F057352	Metagenome	136	Y
F059942	Metagenome	133	Y
F074757	Metagenome	119	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211477_100014311	F074757	GGAG	MKAGDLVTLSSYCLQSAPMYVWRNRIWKDKKPLVGLVTRVAPNPRTYSFTSVNERTHYYIKWIGDGPGSRYGRSFHKLDGYFLRNDLKFVKKGDFK
Ga0211477_1000143113	F079212	GAGG	VSENQKELIDRCIESHYNMIRYHRRAIVELSRKMLKEPEMCTECFDFEIINESGRSDKD
Ga0211477_1000143114	F018286	GGAG	MNMLTTFILLGMVDSHDEHFATVELNTNPASNGGPATAVMPVNAFPCEIYEGKVFYIVKLHDNQDAVIICQEDAKSEREPERVD
Ga0211477_1000143117	F030886	AGGAG	MSYHGQPPPEYSKVGIGVVNPLHRIELKLRMVQEVLDNISDQSILTANDLKCKIEKVLKE
Ga0211477_100014314	F057352	AGGAG	MKLWVLHGSYEGESFTSIHLTEKGCALACIADVLEFLGVENEEEALSVMNDSYEYRQTDGEQTEAFEWDQEKMRVMSSKDLWKIFTEWTDICWDRMSDRSYYINAEPKMVQA
Ga0211477_100014317	F059942	GAGG	VKAGDLISFKPVDFGLEDWSNPCIVLRQYEAPDEGLWVVWCDGVACVIDDNNYEVVYLTGSLQKEC