Scaffold Ga0211477

Basic Information
Taxon OID	3300020374 Open in IMG/M
Scaffold ID	Ga0211477_10000688 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020374 Open in IMG/M

Scaffold ID

Ga0211477_10000688 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20525
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (48.39%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

20525

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (48.39%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_030
Coordinates	Lat. (^o)	33.93	Long. (^o)	32.7322	Alt. (m)	Depth (m)	70
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_030

Coordinates

Lat. (^o)

33.93

Long. (^o)

32.7322

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022909	Metagenome / Metatranscriptome	212	Y
F023957	Metagenome / Metatranscriptome	208	Y
F029485	Metagenome / Metatranscriptome	188	Y
F094410	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211477_100006881	F094410	N/A	IEFVAAIPVLSNDLSKRENDCTIAYCKQRNIPYELYHIDVEELFNGPELEKYGEMFPTTQPQMTIAGKYFDMLPDCCIVYPGFMMHVSTSDWTRTKNNGFMPFVPHQTQEHAAEVFGKEYTNFQEHYVDMYTSWMFTQSYGEVLKSPTQEFVDNAPHRYYQYEIRTIKQAGFDVKPTTQKLIGIELLKTHFGHDKYDSELRQRLAPFGPLTMKYASLQYTVKVDTRLKEMLEAHHETSFDFINKLF
Ga0211477_1000068811	F023957	AGGAG	MSNKTPYEIRLELIQEARLILQAKASKPEFMPSTEEVISEAEKLNQFISRKPDQR
Ga0211477_1000068823	F029485	AGGA	MDSYWQWNKDNFPWHYDPSSKESDVQYVGRFVSNKLQDGIDNVIKNFKEDDVYDEVSIKGKPYNDEAKEIMEGYHNDLTRAGYTSHNTGGRQTRDNLPSIFTILGQVSGLWNPQLMFLEQPPGRFVPWHRDSYNNYRRNFAKVSDETEVIRYLVQLNDWNWGHYVAVGNDVIHQYKMGDIHCWPEGIYHCTGNAGLWPRYCLTITGCVTPDSLHIKKAKDIVIK
Ga0211477_100006884	F022909	N/A	MVRVGRRQMVDIDDKEILRTFFKGEIGCIEYSDKWLPQLEEFCSIAKDLGYVSNESPDAMKLDEVQYHCMIHIPTQKIYAVAGVQYMPEYKEGYYRVWTRLCRIPNADIPMTTTRRYGRGEMPEFDGLLYFNCEWATRQDNFKATFGTTLANKAYADNYVKSTNTITDYIKRNWWKRKGIAVPEGMTEFYCVPQVVWNINFNKFKDL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211477_10000688

Overview

Ecosystem & Geography

Associated Families

Sequences