Scaffold Ga0211477_10000300

Overview

Basic Information

• Taxon OID: 3300020374
• Scaffold ID: Ga0211477_10000300
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30916
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (79.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED202 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_030
• Coordinates
  • Lat. (^o): 33.93
  • Long. (^o): 32.7322
  • Depth (m): 70

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005619	Metagenome / Metatranscriptome	395	Y
F013594	Metagenome / Metatranscriptome	270	N
F073584	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211477_1000030050	F005619	N/A	MSKEYKKENYPEGTSRKDVLDNIIDHDDIRLIVLKQFNYMRINGINLVQDADDLVNLYLKISKDFK
Ga0211477_1000030059	F073584	AGGAG	LGKIKTDELEERVGSAGITVNSTVKVDTITEKTSNAGVTIEGVTLKDGSIVGAVDIGLVIALG
Ga0211477_1000030061	F013594	GGA	MSTTYGDRPLRVTFTSSDSSGVAEFFDGSETGAIGITVPRFSTTERNALTASTVKQGMIIFNETDGKMQVYTGSDASNTSSSWTDIGGGTILADADGNTNIEIGATTADEIDVDIAGTKIATFDAAGLAIETGAVGVRHNSTVAATATIASGETLGLFGEVTFTGIVTVAGEMVIV