Scaffold Ga0211477_10000046

Overview

Basic Information

• Taxon OID: 3300020374
• Scaffold ID: Ga0211477_10000046
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67645
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (69.74%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_030
• Coordinates
  • Lat. (^o): 33.93
  • Long. (^o): 32.7322
  • Depth (m): 70

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020879	Metagenome / Metatranscriptome	221	Y
F040866	Metagenome / Metatranscriptome	161	Y
F048328	Metagenome / Metatranscriptome	148	N
F067759	Metagenome / Metatranscriptome	125	Y
F089156	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211477_100000462	F089156	N/A	MLLIQFTDTIDTSTLPVEILQSFKHNTYLIDCEISEYDIIYSITSNYPVLSMQSNEDCAYIDVYERLTTSYTTVSHEDTLAPLIEKLDLLEALQPQLLCFSWQMDRNYIIDYRIQKLIEAGNMVVCAGGNQDLPIHDISPIAVDGVVKVGGNKHNGHYQNWVDIYDVTVPNEPNSNKAVHTVCELMANKELELDYELGYYSDSSIRSAPWPLRLAQTPSNQTKYYEFNPISNLRYCAGEHLIPVRPGDQVSMLYGGCELENFVGSQFVDLDKELPRGITFDLQSGWLYGTFKFKTNMFHRFMVDLNGQLFEYHMISCDVENKLSYQDVKHKYFNRPYDAPPFTMREYWIPMARPVKLLEPGDPFIRTYNLNDYHLYREAE
Ga0211477_1000004625	F067759	AGGA	MKEPKPEQKLEQQKQVYADSNNLEAHIIADMLRIESITTELREFKEDTKHRLNKMENWLVAIVGTSFTTLIAIVVSLLVNVFGS
Ga0211477_1000004636	F048328	GGA	MSFGSNNTLYILGYPSIDLVLTSDGITVDNRPMNQTKLTVHKGFDSQLNFFVRNRDRVLQNLSGKTLYASIINPNTNKRVVFKQLSLVNSGTTGEAKLNFVPGDLASLSPGLYQISISESSDSGVTQSPLYANQNDRIISDLEIRSSLEYDPIATQTQTSFIDQGSNVFVTSAMYGNQDQNFNHSQHTIGVYMTNFVGNVTIQGSALESTPSQNSDWYDIDVQGDGSAEVPFASAFSGIDAFNFKVNTNWVRVKFNKTSGSLDKVLLRN
Ga0211477_100000465	F020879	N/A	MTNKQKKKLHNIVQSTLKIVGCSLLFLGMSMGLGITTSVHMEIIAYIMLFLGTIIMIIHSFRGNDHMVLLVSSAGFLLISNAFLDTPTAFLIAEMYGIALTEDQGWFATYGKLFVEILKAIA
Ga0211477_1000004670	F040866	AGGAGG	MSSKSLYETFGNEVSYEMRRDKLVQFIENNTINFPLPEASVEILVNMVPQSFKGMDPNKINIVENRLTSIGFTGPTAKTLAVALITVAEKQGVHPISYFELNEDSIKLAEQTYKAINSIRPKGNQIGLTVDKFNKDSKLASVIRP