NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211660_10130738

Scaffold Ga0211660_10130738


Overview

Basic Information
Taxon OID3300020373 Open in IMG/M
Scaffold IDGa0211660_10130738 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000959 (ERX555949-ERR598946)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)919
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9057Long. (o)-96.155Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005149Metagenome / Metatranscriptome410Y
F093984Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0211660_101307382F093984N/AMKTIRHMKFPIRMELDDPFENLEIPVLQNFVTSGWDDWVIERYNPNQLELFDIYEFQKYDRFGKVIDKSKSRRDVVIR
Ga0211660_101307383F005149N/AMTKCILCTAVTESGQGFYDHLEDVHMMPIRRMRISEFGQPIEETHDECLERFMFNHEEYGTELCWCPDCVGGETLSMVNKICSKHGQLYIKGEHK

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