Scaffold Ga0211660_10082872

Overview

Basic Information

• Taxon OID: 3300020373
• Scaffold ID: Ga0211660_10082872
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000959 (ERX555949-ERR598946)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1259
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured Mediterranean phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_100
• Coordinates
  • Lat. (^o): -12.9057
  • Long. (^o): -96.155
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029130	Metagenome	189	Y
F057286	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211660_100828723	F029130	N/A	MTTTDKPNFITVKFDEIRKDPTHRLDPKYWIRKRRKNEENLILAKKLAKHLILHRLWNGLSQKKIALDLNVSHQQYQKFESCTNDILYIQVAKIFKNRGWSTEILGSNPYEVLNEWIKRDYTRQDEQGNTIEYSSEHIPKPDKLTKIENAWKLLDLKAKKNYYKNDK
Ga0211660_100828724	F057286	AGG	MTRGKTKRLAWTGSHNKYKKLNAIYLETYNKIFKSKKKNKEGKNNDNNR