NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211660_10056025

Scaffold Ga0211660_10056025


Overview

Basic Information
Taxon OID3300020373 Open in IMG/M
Scaffold IDGa0211660_10056025 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000959 (ERX555949-ERR598946)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1656
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9057Long. (o)-96.155Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016590Metagenome246Y
F063067Metagenome / Metatranscriptome130Y
F072442Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0211660_100560252F072442AGGAMKTFKEFFQLGVTKPSMFDVQNYLNHLGTRLMQVPDIKRKIERHFKNIKNLKLDRVGRKVLSFEEFDPEKNEKI
Ga0211660_100560253F016590N/AMIRFKQYLKEFAVQSTSDYVFDVPSGHSGGLKIPISGPMFKRIWPDTIRSTVFHVTDHAGLGRLKKLEGGKKTISAFFSMMSRYMESGVATSGGVVVEMDADVVVSASSDIMSEVDKTGRRWVEMSWFANAQRYGTGPAFDKVEKDLNTLIVGLVKKHLPKGKEVQQTKHFGKDQGAAFDIWSNMKHHLKGDGRILRVVIKDYFDGVEKIIKKHKKTMGNIFYGYARSKRSTEDSWDEQLVNNIKVKTVHLIKPTQRKIDTANPDRTHPIDSYEFAKEKAEKLFGTVKEWDFSTELEIYTREVVKKEQPPRNIAY
Ga0211660_100560254F063067N/ALGKSTGGKEKSLIIKDYIDGMEKVMKKHSKVLGTLLTDYTKKRIQEPDPDSGDRPMWDELVVNNFKIKKVHISAYEDVQDDDDMEGFPFKLYTDNGDLADYINRTVANIKL
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Institute for Fundamental Biomedical Research
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