Scaffold Ga0211660_10013473

Overview

Basic Information

• Taxon OID: 3300020373
• Scaffold ID: Ga0211660_10013473
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000959 (ERX555949-ERR598946)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4512
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_100
• Coordinates
  • Lat. (^o): -12.9057
  • Long. (^o): -96.155
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018196	Metagenome / Metatranscriptome	236	N
F023368	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211660_1001347312	F018196	AGGAGG	MRADDITKAVEYKQGHFNMVQYILKEKPEWSISVYDKETGETPVEYSKDYEEIRKAIKDYETEIMVYEKNNKQIGWAWFIPYNETDEDIVTDYSDTLTLNKWAKQFEELHKQLEGAX
Ga0211660_100134735	F023368	AGGAG	MHKYNKSTTKYKDVPIEDKIFSYLNKQDTNNAETLCMLLAHLSMPTMCCSWVSEEHFNNLLEKYKIDITPYVKDDERITTSIKSEIADEMFKLVETGKYKKRNLIKVLREKFKDVNAGVIHRLIKKNLSLRILEIDRTYKTKPYVIKGKYYIGG