Scaffold Ga0211683_10081268

Overview

Basic Information

• Taxon OID: 3300020372
• Scaffold ID: Ga0211683_10081268
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000787 (ERX556133-ERR599090)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1053
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Fussvirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_085
• Coordinates
  • Lat. (^o): -62.1363
  • Long. (^o): -49.3331
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024137	Metagenome / Metatranscriptome	207	Y
F031926	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211683_100812682	F031926	GAGG	MSLNCTVSNIQFDFAFNDAVKKASKSVSGEATTFQNGIPNQTVLVFKTICCLPDEEINTRVISEWYFKLFGVAISTTSTVRNMSRLSDYGFLDMVDNPHGKSHKYTWIKLTQAGRKLQKLFMGSASEWKDKPRTVVERTIKTAMSGGSYD
Ga0211683_100812683	F024137	N/A	WKIVRHKYNGVSDFDYHITDLRSQYPNELVYKNAVGVLPFYCKTNEVDDDFEKVTSIKLGDCNIRYQFDKQVKHSDSSVEENVDYLYGDPRVGMIRDLITQTKVRQNEPKSLRVLNFKREETNVVKLHSK