Scaffold Ga0211683_10012929

Overview

Basic Information

• Taxon OID: 3300020372
• Scaffold ID: Ga0211683_10012929
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000787 (ERX556133-ERR599090)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2958
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_085
• Coordinates
  • Lat. (^o): -62.1363
  • Long. (^o): -49.3331
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015659	Metagenome	253	Y
F016879	Metagenome	244	Y
F020445	Metagenome / Metatranscriptome	224	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211683_100129295	F016879	GGAG	MSVIKESFFEASFKTIEEFESAEIAAKTNPSDNAELTVTEIKLEKSVIKTNKDKEQTNEPEQHSKIVPEAK
Ga0211683_100129298	F020445	AGGA	MSDFDNTAALWKRQARDTDVAGKKYPHYQGNVTVGGKKMSLAAWLNVDKTKEGQPDISLKISEMMVKEEAPF
Ga0211683_100129299	F015659	GGA	MKLGNLQDAIKEFRDNIDDSDYANLGAKGKYLTVPYRIKFVRDFFGQRMSIQTESTELANGSHKFKANIYIDDRLVSVGESKQMKNGDKEFEKQQTVSIGRGLSILGFFGDELATAEEMIQFLEPKAKAKEIPKAAPIVKLVPKVKANIESLANDWIEVLKKTAETSNSLSNYEKNLNVMRKEYISDLHLIWSDLIQQARIDSEYLKQQKLITNRKI