Scaffold Ga0211500_1083064

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211500_1083064

Scaffold Ga0211500_1083064

Overview

Basic Information
Taxon OID	3300020371 Open in IMG/M
Scaffold ID	Ga0211500_1083064 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000003 (ERX555978-ERR598991)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	964
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_034
Coordinates	Lat. (^o)	18.4017	Long. (^o)	39.855	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025996	Metagenome	199	Y
F082531	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211500_10830642	F025996	AGGAG	MMNRELELSIGELDKSIIALSKRKLKLLQEVEKINLDISFLRQQQEQLINV
Ga0211500_10830644	F082531	N/A	MTVNPLSELYMNDQDIEQFIKAFDDFMQHAETEIDSHKKWKEAERYKDEFYERKAAELEVTV

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