NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211709_10192879

Scaffold Ga0211709_10192879


Overview

Basic Information
Taxon OID3300020369 Open in IMG/M
Scaffold IDGa0211709_10192879 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000446 (ERX556016-ERR599044)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)615
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_070
CoordinatesLat. (o)-20.3356Long. (o)-3.2659Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F022974Metagenome / Metatranscriptome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0211709_101928791F022974GAGMENETYYIAKLSKEGKFLSSDIFETLESARLWAMKETKLLVSDSFLRKCKADDVIVEIDKHFFGY
Ga0211709_101928792F000615GAGVTRNQNNIVSGLERPENIMCRLRLFYECSDGSMGFGEHVMRYEDDIAGFIKHWKTGGRIVITEHIDLV

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