Scaffold Ga0211709_10055343

Overview

Basic Information

• Taxon OID: 3300020369
• Scaffold ID: Ga0211709_10055343
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000446 (ERX556016-ERR599044)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1268
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_070
• Coordinates
  • Lat. (^o): -20.3356
  • Long. (^o): -3.2659
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000423	Metagenome / Metatranscriptome	1156	Y
F017323	Metagenome	241	Y
F081433	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211709_100553432	F017323	N/A	LTYLGLTFKILDMFNNKGESKMNTEKTKVFLVIKKTVWNDGETWFDVSEHSNSKERAEQCMTALNTLKSDEKVSYLICEVDHANK
Ga0211709_100553433	F000423	GAGG	MQINKAIFYIKYFAKKHDCEIERKATLDEDCFEGKHKKFGYPYKVYVDVQATEERNNGKPQYRTATHKWEINDHQTL
Ga0211709_100553434	F081433	GGA	MTIKHFKKLPHYLQPRIISAVSFIHTASPNINLAQERIAKVARVLSEKELRYVLSLLVLDKLLDMVQSSDEFKSFVPTKKTLQ