NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211674_10051804

Scaffold Ga0211674_10051804


Overview

Basic Information
Taxon OID3300020368 Open in IMG/M
Scaffold IDGa0211674_10051804 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001027 (ERX556049-ERR599093)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1121
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_098
CoordinatesLat. (o)-25.8126Long. (o)-111.7386Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042374Metagenome158Y
F059457Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0211674_100518041F042374GGAGMYKTISIIFILVSIGGCSTMPIVDSRGKSSANIKGDMNRFHDDYYTCKSLVKDQTNMGWDIGKNIYNTLRFKVLWLSPRLDTRK
Ga0211674_100518043F059457AGGGGGMIDKPTRIGNTELYTTRVLNMSVAKYYGVLKEYNELVVEARKLNKKELEKNGEKAELNLYKSIKYNLNKLVLKKLQGDKNV

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