NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211674_10049859

Scaffold Ga0211674_10049859


Overview

Basic Information
Taxon OID3300020368 Open in IMG/M
Scaffold IDGa0211674_10049859 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001027 (ERX556049-ERR599093)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1147
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_098
CoordinatesLat. (o)-25.8126Long. (o)-111.7386Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096285Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0211674_100498592F096285GGAMNWLKTAAIGIWIRAHSDLLFRALISLSIFLILNSIYSKYEAVLLVTNPEKLFIPLYIYTFIILVLVIWTLLALRWVSGMAVAKKKVAAKESFTNKSDEYKKIADVASYPKLKTKKDSIIES

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