NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211703_10119640

Scaffold Ga0211703_10119640


Overview

Basic Information
Taxon OID3300020367 Open in IMG/M
Scaffold IDGa0211703_10119640 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000508 (ERX556112-ERR599005)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)671
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7887Long. (o)-17.9142Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005533Metagenome / Metatranscriptome397Y
F029129Metagenome / Metatranscriptome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0211703_101196401F029129GGAGMTTKTETKKFIIEVIGEQIKVNKYGDKLHSLIDDLGWEYQRMGMSGRETYDEICHLLNMIPEDEVYM
Ga0211703_101196402F005533GGGGGMDYTHNETALLTLISNINNQFYYIGEENDKVAPIDVKKFTEHCVAFIDSLEIEK

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