Scaffold Ga0211703_10037746

Overview

Basic Information

• Taxon OID: 3300020367
• Scaffold ID: Ga0211703_10037746
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000508 (ERX556112-ERR599005)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1135
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7887
  • Long. (^o): -17.9142
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013899	Metagenome / Metatranscriptome	267	Y
F015350	Metagenome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211703_100377461	F015350	AGG	MKIYKWLIIIVVAILVGWQYDAFQKNLHEVEIRIKKFESVDLFNILEQISLAHIESIESVDILNKKQMEVQALEKEIKEKFTIQERELRAQVKTIETKLQKLRSELNDGLTKIERNVSTIDSVVDEKFKTLWMMINNK
Ga0211703_100377463	F013899	N/A	MFPDTSEIEEGEKGQFELFQSGVSFMKAGHGKFFDLEDVKKKLTESGQDLFTNR