Scaffold Ga0211703_10024892

Overview

Basic Information

• Taxon OID: 3300020367
• Scaffold ID: Ga0211703_10024892
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000508 (ERX556112-ERR599005)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1374
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7887
  • Long. (^o): -17.9142
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006867	Metagenome / Metatranscriptome	363	Y
F098215	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211703_100248922	F006867	AGGAG	MLQGKELHKSIQKRCRIQPGMLVKSSHRDVIDKLALVVKVSPACSFDRDYEGAEEHIFYLCQPFDGTPDFVDYVCNMEKI
Ga0211703_100248923	F098215	N/A	MNNYNGAEFTYGIGDLVSFTHSRQTEEYVEDFALTGIIIKERFVYTADNKFLVRTPERDYWVSRPLLTLLSRAENKP