NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211489_10055470

Scaffold Ga0211489_10055470


Overview

Basic Information
Taxon OID3300020366 Open in IMG/M
Scaffold IDGa0211489_10055470 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000437 (ERX556091-ERR599146)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1052
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_065
CoordinatesLat. (o)-35.2087Long. (o)26.2932Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076487Metagenome118Y
F078594Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0211489_100554702F078594AGGMIMRKILGRYVIGEVIVPFLIIFEKLIKRLRLFLFRQQMDIYYHYKDRQDTEFLNHIRTQINYGKENL
Ga0211489_100554704F076487AGGAGMVLYGETLEINENTENTNQAVYDLYEMKRETLAFNESGCKQGYEDLLDDTDFFTPEDFTDTYNVKGFTDEQVIAICENGGLL

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