Scaffold Ga0211489_10011865

Overview

Basic Information

• Taxon OID: 3300020366
• Scaffold ID: Ga0211489_10011865
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000437 (ERX556091-ERR599146)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2281
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_065
• Coordinates
  • Lat. (^o): -35.2087
  • Long. (^o): 26.2932
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093977	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211489_100118653	F093977	AGG	VIGLEPEVQRLIQKQKRDIIAQRTAQDLAWSAIRTKLSGKLFDQQVALRETMSRVHAQRDFNENIRIGQSITALQCEFQHRCTITSRAQSGRIEKLQAELQKKLHLDSAKFQRMHQNLCVTKRDRLRTRRDQLACVRDTVYQLQCFGSRIVAEARNSDHAVWIQATISHVNTISKESFSVRTEEVLRRRDTTIGNIIHHDQALTHTWELGIMHAADAYETSCKDYHCAIIARLQIQRTNWIKHTKILIREIQSLNQEVCALKAIGDKTKNRWHDMEVALAKPSYEAGSHAYKLLCTQTSRQQTHAQELYLLDDKCAAAELPIKAITTNIRRLVATYDFLQGQHHEFHQRALISKNKAVQCHLRDNANRLVRIVDKIGLETVRHNHLTKMLASYTRS