Scaffold Ga0211506_1042353

Overview

Basic Information

• Taxon OID: 3300020365
• Scaffold ID: Ga0211506_1042353
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000034 (ERX555943-ERR599143)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1293
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_036
• Coordinates
  • Lat. (^o): 20.8151
  • Long. (^o): 63.5046
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F049295	Metagenome	147	N
F083388	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211506_10423532	F083388	AGGA	MVGMLMQKRISNIEWVITRCNPEFKKVWERKLEQLINRRVEMAYERMVENARSVH
Ga0211506_10423534	F000720	GAGG	MTLIKENNKVRKEIPNRMMSATFALPIDGRRVVGIVNYTATDSGLMPLAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVIGQMANYLHKNMEDIIMGKQPEKKQRELSTDPYAMKE
Ga0211506_10423536	F049295	GAG	MFDEIEIEWIPEDTGAPYEVDMNAVEADTPAHIVDKWCKEKYGHTNWARMGVMSPEDLLGNPHDFDFDEGIIYFKNAHLV