Basic Information | |
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Taxon OID | 3300020365 Open in IMG/M |
Scaffold ID | Ga0211506_1023631 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000034 (ERX555943-ERR599143) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1748 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_036 | |||||||
Coordinates | Lat. (o) | 20.8151 | Long. (o) | 63.5046 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002495 | Metagenome / Metatranscriptome | 554 | Y |
F008307 | Metagenome / Metatranscriptome | 335 | Y |
F043149 | Metagenome / Metatranscriptome | 157 | N |
F045772 | Metagenome / Metatranscriptome | 152 | N |
F071633 | Metagenome / Metatranscriptome | 122 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211506_10236311 | F043149 | AGGAG | MSLRNSNVRLYAKLDKAHKKVYAAKDKGRQCVHTLKAFKEYNQLFRRIVEAENKDARFLY |
Ga0211506_10236312 | F008307 | AGCAG | MVKVLKRSSLELAVDFEEIFDGASVEEATQKAHNQKMPSEFAKANITDNKLISANIKLIGEENDELKK |
Ga0211506_10236315 | F071633 | N/A | VKVVFLILVIYSGEGGLKYEKIPFAYSLLPITCDEMYEKNVKYVENPNYKEGNGEVWVLTKYKNQNVIAHYCKDSEGKYVR |
Ga0211506_10236316 | F002495 | GGAGG | MSNNNGSGKQKDFVLFPYDANNEKAIRIDFSGNVNLDNGNKGTILGVKGSSKDGNTKFLKIYAQVGVLFKNDDGKFTGEMNYSEAGGHKGLIGWINESGNILSGYKNEPRPKQDKPQSKEIPF |
Ga0211506_10236317 | F045772 | N/A | RCIAAFGLSGSEYASAEELVNALNNQSTTKQVSIKDTIKKQTTETKLTALYSDWKKQNDSIEKDFESQQQSIKKNGGQNVKQQW |
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