NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211506_1023631

Scaffold Ga0211506_1023631


Overview

Basic Information
Taxon OID3300020365 Open in IMG/M
Scaffold IDGa0211506_1023631 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000034 (ERX555943-ERR599143)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1748
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_036
CoordinatesLat. (o)20.8151Long. (o)63.5046Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002495Metagenome / Metatranscriptome554Y
F008307Metagenome / Metatranscriptome335Y
F043149Metagenome / Metatranscriptome157N
F045772Metagenome / Metatranscriptome152N
F071633Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0211506_10236311F043149AGGAGMSLRNSNVRLYAKLDKAHKKVYAAKDKGRQCVHTLKAFKEYNQLFRRIVEAENKDARFLY
Ga0211506_10236312F008307AGCAGMVKVLKRSSLELAVDFEEIFDGASVEEATQKAHNQKMPSEFAKANITDNKLISANIKLIGEENDELKK
Ga0211506_10236315F071633N/AVKVVFLILVIYSGEGGLKYEKIPFAYSLLPITCDEMYEKNVKYVENPNYKEGNGEVWVLTKYKNQNVIAHYCKDSEGKYVR
Ga0211506_10236316F002495GGAGGMSNNNGSGKQKDFVLFPYDANNEKAIRIDFSGNVNLDNGNKGTILGVKGSSKDGNTKFLKIYAQVGVLFKNDDGKFTGEMNYSEAGGHKGLIGWINESGNILSGYKNEPRPKQDKPQSKEIPF
Ga0211506_10236317F045772N/ARCIAAFGLSGSEYASAEELVNALNNQSTTKQVSIKDTIKKQTTETKLTALYSDWKKQNDSIEKDFESQQQSIKKNGGQNVKQQW

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