Scaffold Ga0211506_1023631

Overview

Basic Information

• Taxon OID: 3300020365
• Scaffold ID: Ga0211506_1023631
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000034 (ERX555943-ERR599143)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1748
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_036
• Coordinates
  • Lat. (^o): 20.8151
  • Long. (^o): 63.5046
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F008307	Metagenome / Metatranscriptome	335	Y
F043149	Metagenome / Metatranscriptome	157	N
F045772	Metagenome / Metatranscriptome	152	N
F071633	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211506_10236311	F043149	AGGAG	MSLRNSNVRLYAKLDKAHKKVYAAKDKGRQCVHTLKAFKEYNQLFRRIVEAENKDARFLY
Ga0211506_10236312	F008307	AGCAG	MVKVLKRSSLELAVDFEEIFDGASVEEATQKAHNQKMPSEFAKANITDNKLISANIKLIGEENDELKK
Ga0211506_10236315	F071633	N/A	VKVVFLILVIYSGEGGLKYEKIPFAYSLLPITCDEMYEKNVKYVENPNYKEGNGEVWVLTKYKNQNVIAHYCKDSEGKYVR
Ga0211506_10236316	F002495	GGAGG	MSNNNGSGKQKDFVLFPYDANNEKAIRIDFSGNVNLDNGNKGTILGVKGSSKDGNTKFLKIYAQVGVLFKNDDGKFTGEMNYSEAGGHKGLIGWINESGNILSGYKNEPRPKQDKPQSKEIPF
Ga0211506_10236317	F045772	N/A	RCIAAFGLSGSEYASAEELVNALNNQSTTKQVSIKDTIKKQTTETKLTALYSDWKKQNDSIEKDFESQQQSIKKNGGQNVKQQW