Scaffold Ga0211506_1017100

Overview

Basic Information

• Taxon OID: 3300020365
• Scaffold ID: Ga0211506_1017100
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000034 (ERX555943-ERR599143)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2071
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_036
• Coordinates
  • Lat. (^o): 20.8151
  • Long. (^o): 63.5046
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F090510	Metagenome / Metatranscriptome	108	N
F097491	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211506_10171002	F090510	AGGA	MKLRNPMAKELRTPKYKSKVVENKKKKLEDDDKHWITHGYEGTEILVKGSDIHNVLDEDVDEGLFGETDESLVARFKKETGGKVDE
Ga0211506_10171008	F097491	N/A	GQFYDEHFSEEEMEILYEIVRGNVDIDTLKEKLVDFFEDSDIPTLPFFDLKTDEGILDRLDYDFGYVGGTGTRAGYRTH