Scaffold Ga0211506_1004827

Overview

Basic Information

• Taxon OID: 3300020365
• Scaffold ID: Ga0211506_1004827
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000034 (ERX555943-ERR599143)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4108
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_036
• Coordinates
  • Lat. (^o): 20.8151
  • Long. (^o): 63.5046
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006772	Metagenome	365	Y
F040392	Metagenome	162	N
F044802	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211506_10048273	F040392	GGA	MCYCTKAIYRAVTEKQTLASIKTAHHYGGSFLSKIAGAALAGDPRNRDRVLQAFPEIIAKYGPGSAFYNEYF
Ga0211506_10048276	F044802	N/A	MSDPTALYRAKENLYMMATCPTWYDHLDQIEAAMAEQDRIYKIRTAAGWDLDEGGWYAPHPENPDEMIPEWEWECETGGPLPEDVK
Ga0211506_10048279	F006772	AGG	MERLNKAIQTATTGDLQRAAMFLEGAREVRAGCTNQRAQARRAQSTAWKKKVDDSITW