Scaffold Ga0211538_1085659

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211538_1085659

Scaffold Ga0211538_1085659

Overview

Basic Information
Taxon OID	3300020364 Open in IMG/M
Scaffold ID	Ga0211538_1085659 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000097 (ERX556021-ERR599037)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	945
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_039
Coordinates	Lat. (^o)	18.735	Long. (^o)	66.3895	Alt. (m)		Depth (m)	270
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006185	Metagenome	379	Y
F025152	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211538_10856592	F025152	N/A	MSNDLYIKFLMRKLIECLNKGQKEKANELIQEIMRELDRGW
Ga0211538_10856593	F006185	GAGG	MKEINIKVSNISSRQWPLLLVELNLVAKNWKKFGPKIDIKAKNFDKIIKWGKKKHGEAD

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