NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211538_1085659

Scaffold Ga0211538_1085659


Overview

Basic Information
Taxon OID3300020364 Open in IMG/M
Scaffold IDGa0211538_1085659 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000097 (ERX556021-ERR599037)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)945
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_039
CoordinatesLat. (o)18.735Long. (o)66.3895Alt. (m)Depth (m)270
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006185Metagenome379Y
F025152Metagenome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0211538_10856592F025152N/AMSNDLYIKFLMRKLIECLNKGQKEKANELIQEIMRELDRGW
Ga0211538_10856593F006185GAGGMKEINIKVSNISSRQWPLLLVELNLVAKNWKKFGPKIDIKAKNFDKIIKWGKKKHGEAD

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