Scaffold Ga0211538_1026812

Overview

Basic Information

• Taxon OID: 3300020364
• Scaffold ID: Ga0211538_1026812
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000097 (ERX556021-ERR599037)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1911
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Catalimonadaceae → Catalinimonas → Catalinimonas alkaloidigena (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_039
• Coordinates
  • Lat. (^o): 18.735
  • Long. (^o): 66.3895
  • Depth (m): 270

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051266	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211538_10268121	F051266	AGGAG	MDIKQPVIHDRHIVKRAFEILTSKGKVQFEHPKDLTIVTCRNEGSMEDRIIPHLSGYENVSILESNLDYLGLDLVVLKDARLPWRNTFKFEMIHNYLNSGKCTTKYFMCCDAIDVIFIDNPQRVIDIFHTFECDALFMSTQSLDGYNCMPEVKKWADRINGG