Scaffold Ga0211538_1015456

Overview

Basic Information

• Taxon OID: 3300020364
• Scaffold ID: Ga0211538_1015456
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000097 (ERX556021-ERR599037)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2721
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_039
• Coordinates
  • Lat. (^o): 18.735
  • Long. (^o): 66.3895
  • Depth (m): 270

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054922	Metagenome / Metatranscriptome	139	N
F059353	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211538_10154563	F059353	AGGAG	MGKLSVTDANELLDKGIITKDTLAKMQKDGLVSTRSKSAERYIQSDSGTWVTPIFYFRGLGGDKYTTEMTELRTEVSQVIEKHTVNKHEVVKLETVNRKTSKGANGK
Ga0211538_10154564	F054922	AGGAG	MIETKTTYNETTDGFVPSPEGIYPCHVIAVNSREYNGNRVFNFQFQVADEVSKLQLPKMVSDGNGWYVTATNDKGDVVTQPGKPFVGRKFYSKGVWFTPDPIKEERWKNRTYKDFCENLGVTFRTDGDNTILDEIEESDVVGKPCLARVITNEYEKNGETKRTMQVNSITAWKDGVALSADELDSDVPF