Scaffold Ga0211538

Basic Information
Taxon OID	3300020364 Open in IMG/M
Scaffold ID	Ga0211538_1004137 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000097 (ERX556021-ERR599037)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020364 Open in IMG/M

Scaffold ID

Ga0211538_1004137 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000097 (ERX556021-ERR599037)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6925
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (77.78%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6925

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (77.78%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_039
Coordinates	Lat. (^o)	18.735	Long. (^o)	66.3895	Alt. (m)	Depth (m)	270
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_039

Coordinates

Lat. (^o)

18.735

Long. (^o)

66.3895

Alt. (m)

Depth (m)

270

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021867	Metagenome	217	N
F038425	Metagenome	166	Y
F041307	Metagenome	160	N
F056907	Metagenome	137	N
F061287	Metagenome	132	Y
F074138	Metagenome	120	N
F075333	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211538_100413714	F061287	GGAG	MDKHDREIMIKVLMELKLDRKLLDRMKDSEIQILFSTLNRHVTNEKN
Ga0211538_100413716	F038425	GGA	MDGEKSRVHCPKCDKLMWWWGYASSYTGDGSSELGLGCENPECDGYEILPEDVYDAIVTEEERIDA
Ga0211538_100413718	F075333	AGG	MKKNSMRYLEGLVERGVRKHLPALKHFGYRERGIESIVNGVVPTEHEDLMTVTKTARWLTTRAPEEYVYGEMIDIDNAIASNIAQYLTNYAKSYIGKVA
Ga0211538_10041372	F041307	GGA	MKDERTDEPVLFCGATTGYETRVSPLPECWLDMSKPAQTKYRKQKKAEYEALNPRSLNYKTVGSKRYKKSY
Ga0211538_10041376	F074138	GAGG	MDWSQLYIHPSDDTTDDDIRDFVEWVSRKAERLGFRVELKRHRKVASGSSDTMSTNPLEQSNEKH
Ga0211538_10041377	F056907	N/A	MSGDAYYIPGETGVGTKLPVGEYEATITALDVVDNVRCGKFIADIFKPVYTVQHRDYPKADIKDNGIFRYKEKPGYNYKPSRNWGFAKFCGILNLEQKDGDRITLPYLKFDMIDGFSVIIEVSYKNFVNESGNPVRYPVGTLRKKVGEVPF
Ga0211538_10041378	F021867	GAGG	VELKGCINKEDNIMDNNVEQVDWDKVNRGKVRYGFALELYKKGGILKPSELGRIEAFVEYVMEGVEYEATDGGKPDKSRPKLIPKNECKEIIKTESEGSKAFVKAMVHIDAEGLKDDDLERVLQALKTGKITMDNLQASLDKIYSIKQTYK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211538_1004137

Overview

Ecosystem & Geography

Associated Families

Sequences