Scaffold Ga0211488_10198402

Overview

Basic Information

• Taxon OID: 3300020362
• Scaffold ID: Ga0211488_10198402
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001234 (ERX556035-ERR599049)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 544
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_033
• Coordinates
  • Lat. (^o): 22.1283
  • Long. (^o): 38.1967
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077387	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211488_101984021	F077387	GAGG	MKNPRHLNTDYDAWLRRLQVEQLKKFYRTFQAILAGQCNDDIDVVRGKIFKLCEAMGGDVYSTMEQIHDELYGVE