Scaffold Ga0211488_10134195

Overview

Basic Information

• Taxon OID: 3300020362
• Scaffold ID: Ga0211488_10134195
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001234 (ERX556035-ERR599049)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 706
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_033
• Coordinates
  • Lat. (^o): 22.1283
  • Long. (^o): 38.1967
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008747	Metagenome / Metatranscriptome	328	Y
F032291	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211488_101341951	F032291	N/A	AEDVMAVGVPEIAPVEESNERPAGRDGETDQDVTGPPLADGVTVVMAVPFVRVKEFGVNVNEEGATSLTTMVTSAVVLPPVLLAVTV
Ga0211488_101341952	F008747	AGG	MAVGVPLMAPVELSSDKPDGSDGETDHEVTAPPLEVGVAVVMVVPLVSVSEFGL
Ga0211488_101341953	F008747	GGCGG	MAPVDESRANPAGSDGETAQVVMAPPLEVGVTVVMAVPLVSVNEFG