NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211488_10022051

Scaffold Ga0211488_10022051


Overview

Basic Information
Taxon OID3300020362 Open in IMG/M
Scaffold IDGa0211488_10022051 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001234 (ERX556035-ERR599049)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2327
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_033
CoordinatesLat. (o)22.1283Long. (o)38.1967Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001026Metagenome / Metatranscriptome802Y
F004869Metagenome / Metatranscriptome420Y

Sequences

Protein IDFamilyRBSSequence
Ga0211488_100220513F004869GGAGMSCNSEHYYAVQSFLEDDELCKIWNIIETAMNREGYDVENAELSMRLYDSELEENIEHDMENLLGSQSEGKDYDITLTTDDDYGSKVDALVDSMSVTEQKVSTTHRRRDLDTL
Ga0211488_100220518F001026GAGGMMHTLKLDDLELTALITHLEGQNEIMCESRLNCSNPSETPDREEVLLNMVYEKAFTIGWDAHINPKVDFNLHQNEDRIYKYK

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