Scaffold Ga0211488_10000320

Overview

Basic Information

• Taxon OID: 3300020362
• Scaffold ID: Ga0211488_10000320
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001234 (ERX556035-ERR599049)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25727
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (80.39%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_033
• Coordinates
  • Lat. (^o): 22.1283
  • Long. (^o): 38.1967
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002444	Metagenome / Metatranscriptome	558	Y
F014085	Metagenome / Metatranscriptome	266	Y
F022423	Metagenome / Metatranscriptome	214	Y
F023355	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211488_1000032015	F023355	AGAAG	MPLPGAYVNRSHTLGQYCGNCKHYINNYCIAFKEQVAPGGWCKIWSGIEIRST
Ga0211488_1000032022	F014085	GGA	VDSLSPLREEALKRAGGRCEWAYCTDNKWLELAHIQGIGMGGNKKRKFDINNVAILCKHHHDIYDGRQRVGTSVAYRDLLKGYLKRESTII
Ga0211488_1000032027	F022423	AGAAG	MQDLNFITQTVAEMTSKVESVETVNKIIGTANQYAQVKKFPASKELWSDEQVGAYLDMIERMLDLPTEFTQAEFETMSIQEKLSAAGIETIDITNGPQTPEGIVGEVVNQMAEQNKYRDDLKCPYCQQMVYDNRNSKRSDKSPDFTCSTNNPAECGGHTGKWRKSWWIDNSDIPEEWGI
Ga0211488_100003204	F002444	N/A	MSMLLMLKEGGSLGIDTIGNLPIDEDIDLLPDAGGSGTLSYALRTSYESLSVTSVTQTQVRAIVLGDS