Scaffold Ga0211531_1035690

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211531_1035690

Scaffold Ga0211531_1035690

Overview

Basic Information
Taxon OID	3300020361 Open in IMG/M
Scaffold ID	Ga0211531_1035690 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000071 (ERX556078-ERR599167)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1473
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_038
Coordinates	Lat. (^o)	18.9918	Long. (^o)	64.5757	Alt. (m)		Depth (m)	340
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013700	Metagenome	269	Y
F058216	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211531_10356901	F013700	GAG	MDFKNLTYPFEELPDAPYTIVRILNECYDDYSNGNLGDGEHMAIGSMVRQEFLRRIVQIGYDEDKFQDIADTIENDVNENNEHLVSKYYEPSETNE
Ga0211531_10356905	F058216	AGGAGG	MNKTIGQLIKEDHWSTRGLAVTINITKEDIQKWEKSNKPYKKSKKKSYLW

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