Scaffold Ga0211531_1027959

Overview

Basic Information

• Taxon OID: 3300020361
• Scaffold ID: Ga0211531_1027959
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000071 (ERX556078-ERR599167)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1717
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_038
• Coordinates
  • Lat. (^o): 18.9918
  • Long. (^o): 64.5757
  • Depth (m): 340

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F015741	Metagenome / Metatranscriptome	252	Y
F073428	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211531_10279591	F073428	N/A	MTKEITTNGSTAVITTDTPMEQTIVIEPEPLSSVSFMGAEVQTSSVWIGLMVVLALVLITRHVLKK
Ga0211531_10279595	F002078	GGA	MFEGQGWFAIAGQIVLVFTAITGALPDRFVQKIPVLRTLWPIFNWLAGNVFNNINHPKGMAAQNDVEKEIDAAKAKVRDRSGMPDVLDGM
Ga0211531_10279596	F015741	AGG	MFLTGCSGFPIVELIPPAFNFALGFYDHNDYYSKECLWYNEIKLNDATKKWLLESNPPEIVSKDLSKVSRNNDIYREVCKKDKSMVDKIKDKADRVLDKTLMATREKEDG