Scaffold Ga0211712_10006795

Overview

Basic Information

• Taxon OID: 3300020360
• Scaffold ID: Ga0211712_10006795
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000459 (ERX555918-ERR599165)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3205
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_070
• Coordinates
  • Lat. (^o): -20.3976
  • Long. (^o): -3.2009
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002747	Metagenome / Metatranscriptome	533	Y
F003154	Metagenome / Metatranscriptome	504	Y
F024562	Metagenome / Metatranscriptome	205	N
F042284	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211712_100067952	F042284	GAG	MNLAAMIMFMIWCSIVFVAIGAWAFMTITRQDKSMYSWDDADDDTFQDGVG
Ga0211712_100067955	F003154	AGGA	MDTLSYMMNLVGGVYEDERGWRHFRVPNKTYDIRMHPMTLEWECSCPAYKFSRGNKTCKHIKIIQNN
Ga0211712_100067958	F024562	GAGG	MAILFEKNFTDPNEKIVRQFTNCCGASDKGTEYGVVCRGCYSPIEGYMADGDDAPEEFENYIDNDSVLERFREFVSQEWNTYMEWHDYTIEKIMKERKND
Ga0211712_100067959	F002747	GGTGG	MANDANRFFVNVSLEIYVPDQGCGEQALKNENQDAEWFANEICSQIPKAINKNFQHSERPYSVNWAHKGEVERG