Scaffold Ga0211610_1001090

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211610_1001090

Scaffold Ga0211610_1001090

Overview

Basic Information
Taxon OID	3300020359 Open in IMG/M
Scaffold ID	Ga0211610_1001090 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX555921-ERR599117)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6818
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (76.92%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_123
Coordinates	Lat. (^o)	-8.896	Long. (^o)	-140.2861	Alt. (m)		Depth (m)	150
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022974	Metagenome / Metatranscriptome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211610_10010903	F022974	AGGA	MENNETYYIAKLSKKGEHLSSEIHKTLEAARLWAMKETKLLVSDNFLRTCKADDIVVEIDEHFFGYEISSEELIKNSKKVLINT

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