Scaffold Ga0211689_1044401

Overview

Basic Information

• Taxon OID: 3300020358
• Scaffold ID: Ga0211689_1044401
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX555925-ERR599009)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1330
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_082
• Coordinates
  • Lat. (^o): -47.1906
  • Long. (^o): -58.2682
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003647	Metagenome / Metatranscriptome	475	Y
F037813	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211689_10444013	F037813	N/A	MKKTLYERMKPEHKKSIAKDFIDRPHSHDALIRVLSDEHYFTAVPYGDAFDIMNSCELDFLGDAFNKDL
Ga0211689_10444014	F003647	N/A	MVMCEWALADIKNRASNKAFAKVTILKLDIEDYKRSLKQGTYGGITYEEAEQVLDGYKVELKVWNYITELIEKQ