Basic Information | |
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Taxon OID | 3300020358 Open in IMG/M |
Scaffold ID | Ga0211689_1021222 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX555925-ERR599009) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2144 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_082 | |||||||
Coordinates | Lat. (o) | -47.1906 | Long. (o) | -58.2682 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005454 | Metagenome / Metatranscriptome | 400 | Y |
F022015 | Metagenome / Metatranscriptome | 216 | Y |
F036489 | Metagenome / Metatranscriptome | 170 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211689_10212226 | F036489 | AGG | MKKNLKNVVFTTMIGLCTFQVGVIFKQNQVNQVNEWRESIVESYILRTDNGTMLGYNINILDDERLFTYED |
Ga0211689_10212227 | F005454 | N/A | MRIIKHYNSHFPNRNTYKCTIRYTTKFGTLDEVNQWRDDQLKNEDYYKSLEESNTKAAGVFYQTLTYKGD |
Ga0211689_10212228 | F022015 | N/A | MYYQSKSNMTWKQAFAEVNASVLKHEIICAIASEVAGKSVENLIGFNDEQRDLVYNDYYNTTELCE |
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