Scaffold Ga0211689_1008992

Overview

Basic Information

• Taxon OID: 3300020358
• Scaffold ID: Ga0211689_1008992
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX555925-ERR599009)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3854
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_082
• Coordinates
  • Lat. (^o): -47.1906
  • Long. (^o): -58.2682
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005129	Metagenome / Metatranscriptome	411	Y
F051139	Metagenome / Metatranscriptome	144	Y
F056896	Metagenome / Metatranscriptome	137	N
F061271	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211689_10089923	F056896	N/A	MWSNCCGAEASYLSDEICGDCLEHAVFDDEDEDEDMGDTCRNGKEWNKCNCC
Ga0211689_10089927	F051139	N/A	MQTAKLKLPVKQFHKLHDFLGEILDHEAETNDFNMENSDIELVEDIRTELFNQIPDEKPIETTYAFTAVAELTSITPIKLYKTDRVKSGGFLITNDRGSQIFCIDKGCSHLSSDQSKNWKFITITND
Ga0211689_10089928	F061271	N/A	MQELDRVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDEYECFKKSWCVSDRGLTEFYKQMLYTFAYEQRNVPEHCFINSCMWAYHSALSSYDKYEEPCRRNTHRKR
Ga0211689_10089929	F005129	N/A	MNYKVKIAEVNKSINLAHHSYIDLGIFTVNATTHSFLYPSVKTDWGADINDTELEFQVNNKRCNYVGFKELYNQLHGDKSFRVFEADVIRQIEEVVEKQIIKEYPGTAITNL