NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211689_1008992

Scaffold Ga0211689_1008992


Overview

Basic Information
Taxon OID3300020358 Open in IMG/M
Scaffold IDGa0211689_1008992 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000768 (ERX555925-ERR599009)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3854
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_082
CoordinatesLat. (o)-47.1906Long. (o)-58.2682Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F051139Metagenome / Metatranscriptome144Y
F056896Metagenome / Metatranscriptome137N
F061271Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0211689_10089923F056896N/AMWSNCCGAEASYLSDEICGDCLEHAVFDDEDEDEDMGDTCRNGKEWNKCNCC
Ga0211689_10089927F051139N/AMQTAKLKLPVKQFHKLHDFLGEILDHEAETNDFNMENSDIELVEDIRTELFNQIPDEKPIETTYAFTAVAELTSITPIKLYKTDRVKSGGFLITNDRGSQIFCIDKGCSHLSSDQSKNWKFITITND
Ga0211689_10089928F061271N/AMQELDRVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDEYECFKKSWCVSDRGLTEFYKQMLYTFAYEQRNVPEHCFINSCMWAYHSALSSYDKYEEPCRRNTHRKR
Ga0211689_10089929F005129N/AMNYKVKIAEVNKSINLAHHSYIDLGIFTVNATTHSFLYPSVKTDWGADINDTELEFQVNNKRCNYVGFKELYNQLHGDKSFRVFEADVIRQIEEVVEKQIIKEYPGTAITNL

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