Scaffold Ga0211689_1002126

Overview

Basic Information

• Taxon OID: 3300020358
• Scaffold ID: Ga0211689_1002126
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX555925-ERR599009)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10184
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_082
• Coordinates
  • Lat. (^o): -47.1906
  • Long. (^o): -58.2682
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009293	Metagenome / Metatranscriptome	320	Y
F058462	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211689_100212611	F058462	AGG	MNFTSPINITSNAKDDFPVRIDYIFDNIGQENCEDIIWQNVIDTVSEIEQNEIGVSVTQSYQYTKLNDHPTILTKWQGMKTANGPEFRIGLGDGVPNSKKTPPIMSGNMKTGVQVNSTLSIQSVKLGSINGDFAIEKNGKWYAIQIGDEVVQQTT
Ga0211689_10021266	F009293	AGGAG	MTRIALDKDHATEMTVHEFDATNIDIIAHSDELYKSFESGWPVVIKNLVIPGVDYNYYDELDDWVIKDNKWIMPWYNSHIKKRERLRTERGWTEEQIDVFHKKHKQANNGWNEIFDKLFPRYNTPERMLSHRYNMLVENKLHIDELDEQHTGNEQQIRMFVNLDKKRPRVLTFGPDLEQMWYKYKDKFNLEELDKTNIHTFISEMRNRCVWNDKMWDQFHHPLHYITFDPGDVWFFNAQWITHQIVFGAKLQCFEADITNESLLHPELCMTERVKNLE