Scaffold Ga0211689_1000337

Overview

Basic Information

• Taxon OID: 3300020358
• Scaffold ID: Ga0211689_1000337
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX555925-ERR599009)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29668
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (78.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_082
• Coordinates
  • Lat. (^o): -47.1906
  • Long. (^o): -58.2682
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005796	Metagenome / Metatranscriptome	390	Y
F025150	Metagenome / Metatranscriptome	203	Y
F047922	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211689_100033736	F005796	N/A	MIGCGMTCYNLGKQEGIESTIEHLVDQGMIQVEEDPK
Ga0211689_100033739	F025150	GGAG	MINVSTEGKQLPEYDTFIDECIMALFPPDAQYDINIWFKKYVDKDGTHAGFCMGDEIESAIDIATHWMYEDAEEVAYEPHEIASNIAHELVHAKQFYKGQINMVDHVWKHNQETINCDGLEYADTPWEVEAYAYEDILTDLLWENV
Ga0211689_100033741	F047922	AGGAG	MTPQEVNDYKNKWKMAAYFLVHVHSDDRAKVRDWCKDFCFQWRYDIKTLTDNYTDTVSFQLSEDCDAFQEWYSNV